Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lche_1016 | pdxB | Lche_1016 | Lche_1015 | Transmembrane protein. | Erythronate-4-phosphate dehydrogenase; Catalyzes the oxidation of erythronate-4-phosphate to 3- hydroxy-2-oxo-4-phosphonooxybutanoate. | 0.568 |
Lche_1287 | Udk_1 | Lche_1287 | Lche_2904 | Uridine kinase. | Uridine kinase. | 0.946 |
Lche_1287 | bcp | Lche_1287 | Lche_0649 | Uridine kinase. | Acetylpolyamine aminohydrolase. | 0.579 |
Lche_1287 | pdxB | Lche_1287 | Lche_1015 | Uridine kinase. | Erythronate-4-phosphate dehydrogenase; Catalyzes the oxidation of erythronate-4-phosphate to 3- hydroxy-2-oxo-4-phosphonooxybutanoate. | 0.582 |
Lche_1287 | udk | Lche_1287 | Lche_2725 | Uridine kinase. | Uridine kinase. | 0.922 |
Lche_1287 | udk-2 | Lche_1287 | Lche_1198 | Uridine kinase. | Uridine kinase. | 0.951 |
Udk_1 | Lche_1287 | Lche_2904 | Lche_1287 | Uridine kinase. | Uridine kinase. | 0.946 |
Udk_1 | bcp | Lche_2904 | Lche_0649 | Uridine kinase. | Acetylpolyamine aminohydrolase. | 0.579 |
Udk_1 | pdxB | Lche_2904 | Lche_1015 | Uridine kinase. | Erythronate-4-phosphate dehydrogenase; Catalyzes the oxidation of erythronate-4-phosphate to 3- hydroxy-2-oxo-4-phosphonooxybutanoate. | 0.582 |
Udk_1 | udk | Lche_2904 | Lche_2725 | Uridine kinase. | Uridine kinase. | 0.900 |
Udk_1 | udk-2 | Lche_2904 | Lche_1198 | Uridine kinase. | Uridine kinase. | 0.927 |
bcp | Lche_1287 | Lche_0649 | Lche_1287 | Acetylpolyamine aminohydrolase. | Uridine kinase. | 0.579 |
bcp | Udk_1 | Lche_0649 | Lche_2904 | Acetylpolyamine aminohydrolase. | Uridine kinase. | 0.579 |
bcp | pdxB | Lche_0649 | Lche_1015 | Acetylpolyamine aminohydrolase. | Erythronate-4-phosphate dehydrogenase; Catalyzes the oxidation of erythronate-4-phosphate to 3- hydroxy-2-oxo-4-phosphonooxybutanoate. | 0.631 |
bcp | rplF | Lche_0649 | Lche_3358 | Acetylpolyamine aminohydrolase. | 50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.540 |
bcp | udk | Lche_0649 | Lche_2725 | Acetylpolyamine aminohydrolase. | Uridine kinase. | 0.847 |
bcp | udk-2 | Lche_0649 | Lche_1198 | Acetylpolyamine aminohydrolase. | Uridine kinase. | 0.579 |
lysAC_1 | lysAC_2 | Lche_1238 | Lche_1244 | Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC). | Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC); Belongs to the Orn/Lys/Arg decarboxylase class-II family. | 0.948 |
lysAC_1 | pdxB | Lche_1238 | Lche_1015 | Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC). | Erythronate-4-phosphate dehydrogenase; Catalyzes the oxidation of erythronate-4-phosphate to 3- hydroxy-2-oxo-4-phosphonooxybutanoate. | 0.560 |
lysAC_1 | serC | Lche_1238 | Lche_1737 | Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC). | Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. | 0.522 |
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