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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lche_1022PAP2 family protein. (215 aa)    
Predicted Functional Partners:
Lche_1021
Aminoacid/polyamine transporter.
  
    0.767
pksJ_1
Polyketide synthase, type I.
   
 0.737
Lche_1834
acyl-CoA synthetase.
   
 0.737
Lche_2715
acyl-CoA synthetase.
   
 0.737
Lche_2506
acyl-CoA synthetase.
   
 0.696
Lche_2502
2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase.
  
 
 0.665
Lche_1443
Cytochrome P450.
   
 0.641
Lche_1023
Hypothetical protein.
       0.617
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.615
Lche_2415
Zinc-iron permease (ZIP) family metal cation transporter.
 
   0.613
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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