Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Lche_1022PAP2 family protein. (215 aa)    
Predicted Functional Partners:
Lche_1021
Aminoacid/polyamine transporter.
  
   0.829
Lche_1023
Hypothetical protein.
       0.749
Lche_1548
Transmembrane protein.
  
 
   0.698
pksJ_1
Polyketide synthase, type I.
  
 0.605
Lche_1834
acyl-CoA synthetase.
  
 0.605
Lche_2715
acyl-CoA synthetase.
  
 0.605
Lche_2415
Zinc-iron permease (ZIP) family metal cation transporter.
 
   0.591
Lche_2524
Sphingomyelin phosphodiesterase.
 
  
 0.552
Lche_1443
Cytochrome P450.
  
 0.538
Lche_2502
2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase.
  
 
 0.535
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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