STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilQType IV pilus (Tfp) assembly protein PilQ. (685 aa)    
Predicted Functional Partners:
pilN
Tfp pilus assembly protein PilN.
 
 
 0.997
pilP
Tfp pilus assembly protein PilP.
 
 
 0.996
pilO
Tfp pilus assembly protein PilO.
 
 
 0.991
Lche_0372
LysM domain-containing protein.
 
 
 
 0.965
pilC
Pilus assembly protein PilC.
 
 
 
 0.895
aspS
aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
      
 0.862
pilE_1
Tfp pilus assembly protein, major type IV pilin class A; Belongs to the N-Me-Phe pilin family.
 
   
 0.855
FimT
Type IV pre-pilin.
 
   
 0.837
uptC
Type II secretion system protein.
  
  
 0.835
pilE_2
Type-IV pilin.
 
   
 0.827
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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