bcsC protein (Legionella cherrii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

bcsC

Cellulose synthase operon protein C precursor. (1002 aa)

Predicted Functional Partners:

pgi

0.838

bcsB

0.830

bcsA

0.825

bcsZ

0.805

Lche_1037

0.787

pagP

0.649

Lche_2580

0.614

galU

0.531

Pla

0.517

sdaC

0.488

Your Current Organism:

Legionella cherrii

NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lche_1037	Lche_2580	Lche_1037	Lche_2580	Hypothetical protein.	Chitinase.	0.479
Lche_1037	Pla	Lche_1037	Lche_0331	Hypothetical protein.	Outer membrane protease.	0.452
Lche_1037	bcsA	Lche_1037	Lche_1044	Hypothetical protein.	Cellulose synthase catalytic subunit; Catalytic subunit of cellulose synthase. It polymerizes uridine 5'-diphosphate glucose to cellulose.	0.986
Lche_1037	bcsB	Lche_1037	Lche_1045	Hypothetical protein.	Cyclic di-GMP-binding protein precursor; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.	0.971
Lche_1037	bcsC	Lche_1037	Lche_1038	Hypothetical protein.	Cellulose synthase operon protein C precursor.	0.787
Lche_1037	bcsZ	Lche_1037	Lche_1046	Hypothetical protein.	Endoglucanase precursor.	0.870
Lche_1037	pagP	Lche_1037	Lche_2881	Hypothetical protein.	Antimicrobial peptide resistance and Lipid A acylation protein PagP; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors.	0.678
Lche_1037	sdaC	Lche_1037	Lche_2519	Hypothetical protein.	Serine transporter.	0.517
Lche_2580	Lche_1037	Lche_2580	Lche_1037	Chitinase.	Hypothetical protein.	0.479
Lche_2580	Pla	Lche_2580	Lche_0331	Chitinase.	Outer membrane protease.	0.541
Lche_2580	bcsB	Lche_2580	Lche_1045	Chitinase.	Cyclic di-GMP-binding protein precursor; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.	0.515
Lche_2580	bcsC	Lche_2580	Lche_1038	Chitinase.	Cellulose synthase operon protein C precursor.	0.614
Lche_2580	pagP	Lche_2580	Lche_2881	Chitinase.	Antimicrobial peptide resistance and Lipid A acylation protein PagP; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors.	0.631
Pla	Lche_1037	Lche_0331	Lche_1037	Outer membrane protease.	Hypothetical protein.	0.452
Pla	Lche_2580	Lche_0331	Lche_2580	Outer membrane protease.	Chitinase.	0.541
Pla	bcsC	Lche_0331	Lche_1038	Outer membrane protease.	Cellulose synthase operon protein C precursor.	0.517
bcsA	Lche_1037	Lche_1044	Lche_1037	Cellulose synthase catalytic subunit; Catalytic subunit of cellulose synthase. It polymerizes uridine 5'-diphosphate glucose to cellulose.	Hypothetical protein.	0.986
bcsA	bcsB	Lche_1044	Lche_1045	Cellulose synthase catalytic subunit; Catalytic subunit of cellulose synthase. It polymerizes uridine 5'-diphosphate glucose to cellulose.	Cyclic di-GMP-binding protein precursor; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.	0.999
bcsA	bcsC	Lche_1044	Lche_1038	Cellulose synthase catalytic subunit; Catalytic subunit of cellulose synthase. It polymerizes uridine 5'-diphosphate glucose to cellulose.	Cellulose synthase operon protein C precursor.	0.825
bcsA	bcsZ	Lche_1044	Lche_1046	Cellulose synthase catalytic subunit; Catalytic subunit of cellulose synthase. It polymerizes uridine 5'-diphosphate glucose to cellulose.	Endoglucanase precursor.	0.973