STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lche_1094Phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Belongs to the UbiA prenyltransferase family. (291 aa)    
Predicted Functional Partners:
Lche_1095
LphB.
 
  
 0.942
DprE1
Hypothetical protein.
 
  
 0.826
Lche_1263
Hypothetical protein.
 
    0.776
CapD
Polysaccharide biosynthesis protein.
       0.732
csaA
Chaperonin CsaA.
  
    0.696
Lche_1093
Substrate of the Dot/Icm secretion system.
       0.638
lgt
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
  
    0.589
etfD
Electron transfer flavoprotein-ubiquinon; Accepts electrons from ETF and reduces ubiquinone.
  
  
 0.420
pksJ_1
Polyketide synthase, type I.
  
  
 0.417
Lche_1834
acyl-CoA synthetase.
  
  
 0.417
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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