STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lche_1117Choline kinase. (813 aa)    
Predicted Functional Partners:
PksL
Polyketide synthase.
 
     0.944
PksJ_6
Hypothetical protein.
 
 
   0.936
Lche_0084
5' DNA primase TraC.
  
    0.783
Lche_0106
Phosphotransferase enzyme family protein.
 
 
   0.776
Lche_0071
Multifunctional nucleotidyltransferase/glutamate rich protein GrpB/ribosomal protein alanine acetyltransferase.
 
     0.774
Lche_0077
Putative secreted esterase.
  
     0.774
Lche_0108
D12 class N6 adenine-specific DNA methyltransferase.
  
     0.774
Lche_0168
Putative conjugative transfer protein TraI.
  
     0.774
Lche_2250
NHL repeat protein.
  
     0.774
Lche_0127
Aminoglycoside 6'-N-acetyltransferase.
  
     0.773
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.