Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Lche_0139 | Lche_0252 | Sensor histidine kinase. | L-gulono-gamma-lactone oxidase. | 0.755 |
Lche_0139 | Lche_0316 | Sensor histidine kinase. | Hypothetical protein. | 0.758 |
Lche_0139 | Lche_0544 | Sensor histidine kinase. | Calcium-transporting ATPase. | 0.774 |
Lche_0139 | Lche_1171 | Sensor histidine kinase. | Dolichol monophosphate mannose synthase. | 0.655 |
Lche_0139 | Lche_2120 | Sensor histidine kinase. | Major facilitator family transporter. | 0.768 |
Lche_0139 | Lche_2502 | Sensor histidine kinase. | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase. | 0.779 |
Lche_0139 | Lche_2621 | Sensor histidine kinase. | Hypothetical protein. | 0.752 |
Lche_0139 | Lche_2667 | Sensor histidine kinase. | Hypothetical protein. | 0.761 |
Lche_0139 | Lche_2796 | Sensor histidine kinase. | O-Antigen ligase. | 0.742 |
Lche_0139 | Lche_3036 | Sensor histidine kinase. | Endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family. | 0.768 |
Lche_0252 | Lche_0139 | L-gulono-gamma-lactone oxidase. | Sensor histidine kinase. | 0.755 |
Lche_0252 | Lche_0316 | L-gulono-gamma-lactone oxidase. | Hypothetical protein. | 0.771 |
Lche_0252 | Lche_0544 | L-gulono-gamma-lactone oxidase. | Calcium-transporting ATPase. | 0.784 |
Lche_0252 | Lche_1171 | L-gulono-gamma-lactone oxidase. | Dolichol monophosphate mannose synthase. | 0.674 |
Lche_0252 | Lche_2120 | L-gulono-gamma-lactone oxidase. | Major facilitator family transporter. | 0.773 |
Lche_0252 | Lche_2502 | L-gulono-gamma-lactone oxidase. | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase. | 0.773 |
Lche_0252 | Lche_2621 | L-gulono-gamma-lactone oxidase. | Hypothetical protein. | 0.758 |
Lche_0252 | Lche_2667 | L-gulono-gamma-lactone oxidase. | Hypothetical protein. | 0.769 |
Lche_0252 | Lche_2796 | L-gulono-gamma-lactone oxidase. | O-Antigen ligase. | 0.762 |
Lche_0252 | Lche_3036 | L-gulono-gamma-lactone oxidase. | Endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family. | 0.774 |
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