Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lche_0141 | Lche_1834 | Lche_0141 | Lche_1834 | Hypothetical protein. | acyl-CoA synthetase. | 0.589 |
Lche_0141 | Lche_2715 | Lche_0141 | Lche_2715 | Hypothetical protein. | acyl-CoA synthetase. | 0.589 |
Lche_0141 | Pip_1 | Lche_0141 | Lche_1207 | Hypothetical protein. | Proline iminopeptidase; Belongs to the peptidase S33 family. | 0.764 |
Lche_0141 | apaH | Lche_0141 | Lche_2837 | Hypothetical protein. | Bis(5'-nucleosyl)-tetraphosphatase; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family. | 0.539 |
Lche_0141 | pip | Lche_0141 | Lche_0745 | Hypothetical protein. | Proline iminopeptidase. | 0.569 |
Lche_0141 | pksJ_1 | Lche_0141 | Lche_0504 | Hypothetical protein. | Polyketide synthase, type I. | 0.589 |
Lche_1834 | Lche_0141 | Lche_1834 | Lche_0141 | acyl-CoA synthetase. | Hypothetical protein. | 0.589 |
Lche_1834 | Lche_2715 | Lche_1834 | Lche_2715 | acyl-CoA synthetase. | acyl-CoA synthetase. | 0.997 |
Lche_1834 | Pip_1 | Lche_1834 | Lche_1207 | acyl-CoA synthetase. | Proline iminopeptidase; Belongs to the peptidase S33 family. | 0.589 |
Lche_1834 | apaH | Lche_1834 | Lche_2837 | acyl-CoA synthetase. | Bis(5'-nucleosyl)-tetraphosphatase; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family. | 0.849 |
Lche_1834 | pip | Lche_1834 | Lche_0745 | acyl-CoA synthetase. | Proline iminopeptidase. | 0.589 |
Lche_1834 | pksJ_1 | Lche_1834 | Lche_0504 | acyl-CoA synthetase. | Polyketide synthase, type I. | 0.997 |
Lche_1834 | proC | Lche_1834 | Lche_1036 | acyl-CoA synthetase. | Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. | 0.470 |
Lche_1834 | putA | Lche_1834 | Lche_1652 | acyl-CoA synthetase. | Bifunctional PutA protein (proline dehydrogenase/ delta-1-pyrroline-5-carboxylate dehydrogenase); Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.487 |
Lche_2715 | Lche_0141 | Lche_2715 | Lche_0141 | acyl-CoA synthetase. | Hypothetical protein. | 0.589 |
Lche_2715 | Lche_1834 | Lche_2715 | Lche_1834 | acyl-CoA synthetase. | acyl-CoA synthetase. | 0.997 |
Lche_2715 | Pip_1 | Lche_2715 | Lche_1207 | acyl-CoA synthetase. | Proline iminopeptidase; Belongs to the peptidase S33 family. | 0.589 |
Lche_2715 | apaH | Lche_2715 | Lche_2837 | acyl-CoA synthetase. | Bis(5'-nucleosyl)-tetraphosphatase; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family. | 0.849 |
Lche_2715 | pip | Lche_2715 | Lche_0745 | acyl-CoA synthetase. | Proline iminopeptidase. | 0.589 |
Lche_2715 | pksJ_1 | Lche_2715 | Lche_0504 | acyl-CoA synthetase. | Polyketide synthase, type I. | 0.997 |
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