Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lche_1291Secreted protein. (121 aa)    
Predicted Functional Partners:
Lche_2153
Protein LvrA.
  
     0.720
Lche_0631
Protein IcmE (DotG).
  
     0.713
Lche_1692
Hypothetical protein.
  
     0.700
dotA
Defect in organelle trafficking protein DotA.
  
     0.676
Lche_2415
Zinc-iron permease (ZIP) family metal cation transporter.
  
     0.666
Lche_2064
Protein-tyrosine phosphatase.
  
     0.644
Lche_2838
Putative helicase/relaxase.
  
     0.642
YdgA
Putative membrane protein YdgA-like protein.
  
     0.638
Lche_3108
Hypothetical protein.
  
     0.609
Lche_2260
Putative virulence protein.
  
     0.588
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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