Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lche_1311 | MerA | Lche_1311 | Lche_0738 | Putative CoA-dependent acyltransferase. | Oxydoreductase. | 0.852 |
Lche_1311 | PdhB_1 | Lche_1311 | Lche_0367 | Putative CoA-dependent acyltransferase. | Pyruvate/2-oxoglutarate dehydrogenase subunit E1. | 0.999 |
Lche_1311 | aceE | Lche_1311 | Lche_1700 | Putative CoA-dependent acyltransferase. | Pyruvate dehydrogenase (decarboxylase component) E1p; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). | 0.758 |
Lche_1311 | gor | Lche_1311 | Lche_2527 | Putative CoA-dependent acyltransferase. | Glutathione reductase. | 0.852 |
Lche_1311 | lpdA | Lche_1311 | Lche_1698 | Putative CoA-dependent acyltransferase. | Dihydrolipoyl dehydrogenase. | 0.852 |
Lche_1311 | odpA | Lche_1311 | Lche_1492 | Putative CoA-dependent acyltransferase. | Pyruvate dehydrogenase E1 alpha subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). | 0.859 |
Lche_1311 | odpB | Lche_1311 | Lche_1491 | Putative CoA-dependent acyltransferase. | Pyruvate dehydrogenase E1 subunit beta. | 0.930 |
Lche_1311 | sucA | Lche_1311 | Lche_0447 | Putative CoA-dependent acyltransferase. | 2-oxoglutarate dehydrogenase E1. | 0.961 |
Lche_1311 | sucD | Lche_1311 | Lche_0450 | Putative CoA-dependent acyltransferase. | succinyl-CoA synthetase subunit alpha; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.714 |
Lche_1311 | succ | Lche_1311 | Lche_0449 | Putative CoA-dependent acyltransferase. | succinyl-CoA synthetase subunit beta; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.750 |
MerA | Lche_1311 | Lche_0738 | Lche_1311 | Oxydoreductase. | Putative CoA-dependent acyltransferase. | 0.852 |
MerA | PdhB_1 | Lche_0738 | Lche_0367 | Oxydoreductase. | Pyruvate/2-oxoglutarate dehydrogenase subunit E1. | 0.994 |
MerA | aceE | Lche_0738 | Lche_1700 | Oxydoreductase. | Pyruvate dehydrogenase (decarboxylase component) E1p; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). | 0.535 |
MerA | odpA | Lche_0738 | Lche_1492 | Oxydoreductase. | Pyruvate dehydrogenase E1 alpha subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). | 0.881 |
MerA | odpB | Lche_0738 | Lche_1491 | Oxydoreductase. | Pyruvate dehydrogenase E1 subunit beta. | 0.921 |
MerA | sucA | Lche_0738 | Lche_0447 | Oxydoreductase. | 2-oxoglutarate dehydrogenase E1. | 0.830 |
MerA | sucD | Lche_0738 | Lche_0450 | Oxydoreductase. | succinyl-CoA synthetase subunit alpha; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.410 |
MerA | succ | Lche_0738 | Lche_0449 | Oxydoreductase. | succinyl-CoA synthetase subunit beta; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.453 |
PdhB_1 | Lche_1311 | Lche_0367 | Lche_1311 | Pyruvate/2-oxoglutarate dehydrogenase subunit E1. | Putative CoA-dependent acyltransferase. | 0.999 |
PdhB_1 | MerA | Lche_0367 | Lche_0738 | Pyruvate/2-oxoglutarate dehydrogenase subunit E1. | Oxydoreductase. | 0.994 |
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