STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fimV_1FimV protein. (729 aa)    
Predicted Functional Partners:
truA
tRNA-pseudouridine synthase I; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.797
pilN
Tfp pilus assembly protein PilN.
  
  
 0.790
pilO
Tfp pilus assembly protein PilO.
  
  
 0.787
pilP
Tfp pilus assembly protein PilP.
  
  
 0.771
Lche_0372
LysM domain-containing protein.
  
   
 0.763
pilZ_1
Type 4 fimbrial biogenesis protein PilZ.
  
     0.755
Lche_3036
Endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.727
Lche_0544
Calcium-transporting ATPase.
  
     0.710
Lche_2120
Major facilitator family transporter.
  
    0.685
pilQ
Type IV pilus (Tfp) assembly protein PilQ.
  
  
 0.675
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.