Lche_1343 protein (Legionella cherrii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

Lche_1343

Hypothetical protein. (94 aa)

Predicted Functional Partners:

fliD

0.765

FliS

0.755

flaA

0.734

Lche_1339

0.584

accD

0.487

folC

0.486

dedE

0.485

Lche_1348

0.470

Your Current Organism:

Legionella cherrii

NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FliS	Lche_1339	Lche_1341	Lche_1339	Flagellar protein FliS.	Enhanced entry protein EnhA.	0.601
FliS	Lche_1343	Lche_1341	Lche_1343	Flagellar protein FliS.	Hypothetical protein.	0.755
FliS	accD	Lche_1341	Lche_1346	Flagellar protein FliS.	acetyl-CoA carboxylase beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.	0.421
FliS	dedE	Lche_1341	Lche_1349	Flagellar protein FliS.	Colicin V.	0.416
FliS	flaA	Lche_1341	Lche_1344	Flagellar protein FliS.	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	0.999
FliS	fliD	Lche_1341	Lche_1342	Flagellar protein FliS.	Flagellar hook associated protein 2 FliD; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.	0.999
FliS	folC	Lche_1341	Lche_1347	Flagellar protein FliS.	Dihydrofolate:folylpolyglutamate synthetase FolC; Belongs to the folylpolyglutamate synthase family.	0.421
Lche_1339	FliS	Lche_1339	Lche_1341	Enhanced entry protein EnhA.	Flagellar protein FliS.	0.601
Lche_1339	Lche_1343	Lche_1339	Lche_1343	Enhanced entry protein EnhA.	Hypothetical protein.	0.584
Lche_1339	accD	Lche_1339	Lche_1346	Enhanced entry protein EnhA.	acetyl-CoA carboxylase beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.	0.559
Lche_1339	dedE	Lche_1339	Lche_1349	Enhanced entry protein EnhA.	Colicin V.	0.611
Lche_1339	fliD	Lche_1339	Lche_1342	Enhanced entry protein EnhA.	Flagellar hook associated protein 2 FliD; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.	0.599
Lche_1339	folC	Lche_1339	Lche_1347	Enhanced entry protein EnhA.	Dihydrofolate:folylpolyglutamate synthetase FolC; Belongs to the folylpolyglutamate synthase family.	0.559
Lche_1343	FliS	Lche_1343	Lche_1341	Hypothetical protein.	Flagellar protein FliS.	0.755
Lche_1343	Lche_1339	Lche_1343	Lche_1339	Hypothetical protein.	Enhanced entry protein EnhA.	0.584
Lche_1343	Lche_1348	Lche_1343	Lche_1348	Hypothetical protein.	Sporulation domain-containing protein.	0.470
Lche_1343	accD	Lche_1343	Lche_1346	Hypothetical protein.	acetyl-CoA carboxylase beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.	0.487
Lche_1343	dedE	Lche_1343	Lche_1349	Hypothetical protein.	Colicin V.	0.485
Lche_1343	flaA	Lche_1343	Lche_1344	Hypothetical protein.	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	0.734
Lche_1343	fliD	Lche_1343	Lche_1342	Hypothetical protein.	Flagellar hook associated protein 2 FliD; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.	0.765