Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lche_1345 | Lche_1348 | Lche_1345 | Lche_1348 | Hypothetical protein. | Sporulation domain-containing protein. | 0.732 |
Lche_1345 | accD | Lche_1345 | Lche_1346 | Hypothetical protein. | acetyl-CoA carboxylase beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. | 0.732 |
Lche_1345 | dedE | Lche_1345 | Lche_1349 | Hypothetical protein. | Colicin V. | 0.732 |
Lche_1345 | flaA | Lche_1345 | Lche_1344 | Hypothetical protein. | Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | 0.543 |
Lche_1345 | folC | Lche_1345 | Lche_1347 | Hypothetical protein. | Dihydrofolate:folylpolyglutamate synthetase FolC; Belongs to the folylpolyglutamate synthase family. | 0.732 |
Lche_1348 | Lche_1345 | Lche_1348 | Lche_1345 | Sporulation domain-containing protein. | Hypothetical protein. | 0.732 |
Lche_1348 | accD | Lche_1348 | Lche_1346 | Sporulation domain-containing protein. | acetyl-CoA carboxylase beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. | 0.800 |
Lche_1348 | dedE | Lche_1348 | Lche_1349 | Sporulation domain-containing protein. | Colicin V. | 0.825 |
Lche_1348 | flaA | Lche_1348 | Lche_1344 | Sporulation domain-containing protein. | Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | 0.574 |
Lche_1348 | folC | Lche_1348 | Lche_1347 | Sporulation domain-containing protein. | Dihydrofolate:folylpolyglutamate synthetase FolC; Belongs to the folylpolyglutamate synthase family. | 0.800 |
accD | Lche_1345 | Lche_1346 | Lche_1345 | acetyl-CoA carboxylase beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. | Hypothetical protein. | 0.732 |
accD | Lche_1348 | Lche_1346 | Lche_1348 | acetyl-CoA carboxylase beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. | Sporulation domain-containing protein. | 0.800 |
accD | dedE | Lche_1346 | Lche_1349 | acetyl-CoA carboxylase beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. | Colicin V. | 0.800 |
accD | flaA | Lche_1346 | Lche_1344 | acetyl-CoA carboxylase beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. | Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | 0.576 |
accD | folC | Lche_1346 | Lche_1347 | acetyl-CoA carboxylase beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. | Dihydrofolate:folylpolyglutamate synthetase FolC; Belongs to the folylpolyglutamate synthase family. | 0.865 |
dedE | Lche_1345 | Lche_1349 | Lche_1345 | Colicin V. | Hypothetical protein. | 0.732 |
dedE | Lche_1348 | Lche_1349 | Lche_1348 | Colicin V. | Sporulation domain-containing protein. | 0.825 |
dedE | accD | Lche_1349 | Lche_1346 | Colicin V. | acetyl-CoA carboxylase beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. | 0.800 |
dedE | flaA | Lche_1349 | Lche_1344 | Colicin V. | Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | 0.585 |
dedE | folC | Lche_1349 | Lche_1347 | Colicin V. | Dihydrofolate:folylpolyglutamate synthetase FolC; Belongs to the folylpolyglutamate synthase family. | 0.822 |
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