STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phbC_1PHA synthase. (597 aa)    
Predicted Functional Partners:
Lche_2283
Poly(3-hydroxybutyrate) depolymerase.
 
  
 0.963
fabG_1
3-oxoacyl-ACP reductase.
  
 
 0.932
FabG_9
Acetyoacetyl CoA reductase.
  
 
 0.927
fabG_2
3-oxoacyl-ACP reductase.
  
 
 0.924
yfcX
Enoyl CoA hydratase; In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.
   
 
 0.913
PhbC_5
Poly-beta-hydroxybutyrate synthase.
  
  
 
0.912
PhaR
PHB/PHA accumulation regulator DNA-binding domain protein.
 
   
 0.764
Pta
Phosphate acetyl/butaryl transferase.
  
 0.684
pta
Bifunctional enoyl-CoA hydratase/phosphate acetyltransferase.
  
 0.665
Lche_2407
Esterase.
 
   
 0.642
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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