Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lche_1555 | LolD_2 | Lche_1555 | Lche_1554 | FtsX-like permease family protein. | ABC transporter ATP-binding protein. | 0.981 |
Lche_1555 | MacB_1 | Lche_1555 | Lche_2834 | FtsX-like permease family protein. | ABC transporter ATP-binding protein. | 0.861 |
Lche_1555 | lolA | Lche_1555 | Lche_1366 | FtsX-like permease family protein. | Outer-membrane lipoprotein carrier protein precursor; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.785 |
Lche_1555 | lolD | Lche_1555 | Lche_0226 | FtsX-like permease family protein. | Lipoprotein releasing system ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. | 0.871 |
LolD_2 | Lche_1555 | Lche_1554 | Lche_1555 | ABC transporter ATP-binding protein. | FtsX-like permease family protein. | 0.981 |
LolD_2 | MacB_1 | Lche_1554 | Lche_2834 | ABC transporter ATP-binding protein. | ABC transporter ATP-binding protein. | 0.437 |
LolD_2 | lolA | Lche_1554 | Lche_1366 | ABC transporter ATP-binding protein. | Outer-membrane lipoprotein carrier protein precursor; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.756 |
LolD_2 | lolCE | Lche_1554 | Lche_0227 | ABC transporter ATP-binding protein. | Lipoprotein-releasing system transmembrane protein LolC/E. | 0.861 |
MacB_1 | Lche_1555 | Lche_2834 | Lche_1555 | ABC transporter ATP-binding protein. | FtsX-like permease family protein. | 0.861 |
MacB_1 | LolD_2 | Lche_2834 | Lche_1554 | ABC transporter ATP-binding protein. | ABC transporter ATP-binding protein. | 0.437 |
MacB_1 | lolA | Lche_2834 | Lche_1366 | ABC transporter ATP-binding protein. | Outer-membrane lipoprotein carrier protein precursor; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.756 |
MacB_1 | lolCE | Lche_2834 | Lche_0227 | ABC transporter ATP-binding protein. | Lipoprotein-releasing system transmembrane protein LolC/E. | 0.861 |
MacB_1 | lolD | Lche_2834 | Lche_0226 | ABC transporter ATP-binding protein. | Lipoprotein releasing system ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. | 0.444 |
amiB | ftsK | Lche_0407 | Lche_1365 | N-acetylmuramoyl-L-alanine amidase. | DNA translocase FtsK. | 0.401 |
amiB | lolA | Lche_0407 | Lche_1366 | N-acetylmuramoyl-L-alanine amidase. | Outer-membrane lipoprotein carrier protein precursor; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.764 |
ftsK | amiB | Lche_1365 | Lche_0407 | DNA translocase FtsK. | N-acetylmuramoyl-L-alanine amidase. | 0.401 |
ftsK | lolA | Lche_1365 | Lche_1366 | DNA translocase FtsK. | Outer-membrane lipoprotein carrier protein precursor; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.851 |
ftsK | ycaJ | Lche_1365 | Lche_1367 | DNA translocase FtsK. | Recombination protein. | 0.836 |
lolA | Lche_1555 | Lche_1366 | Lche_1555 | Outer-membrane lipoprotein carrier protein precursor; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | FtsX-like permease family protein. | 0.785 |
lolA | LolD_2 | Lche_1366 | Lche_1554 | Outer-membrane lipoprotein carrier protein precursor; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | ABC transporter ATP-binding protein. | 0.756 |
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