Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Lche_1376Transmembrane protein. (1343 aa)    
Predicted Functional Partners:
fliH
Polar flagellar assembly protein FliH.
 
     0.872
FliI
Nucleotide binding protein FliI.
       0.838
fliJ
Flagellar protein FliJ.
       0.838
Lche_1377
Hypothetical protein.
       0.739
mpl
UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase; Reutilizes the intact tripeptide L-alanyl-gamma-D-glutamyl- meso-diaminopimelate by linking it to UDP-N-acetylmuramate. Belongs to the MurCDEF family. Mpl subfamily.
       0.731
Lche_1580
Methyl-transferase.
  
     0.716
fliE
Flagellar hook-basal body complex protein.
       0.710
Lche_1692
Hypothetical protein.
  
     0.686
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.677
Lche_2120
Major facilitator family transporter.
  
     0.677
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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