Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Lche_1392Adenosine deaminase. (344 aa)    
Predicted Functional Partners:
Lche_0095
Ankyrin repeats (3 copies).
  
   0.781
Lche_2974
Hypothetical protein.
  
     0.770
Lche_1117
Choline kinase.
  
    0.702
recX-2
Recombination regulator RecX; Modulates RecA activity; Belongs to the RecX family.
  
     0.701
Lche_0077
Putative secreted esterase.
 
     0.698
Lche_0888
Hypothetical protein.
  
     0.687
Lche_0108
D12 class N6 adenine-specific DNA methyltransferase.
  
     0.684
Lche_3140
Outer membrane component of multidrug efflux pump.
  
     0.683
Lche_2250
NHL repeat protein.
  
     0.675
Lche_0071
Multifunctional nucleotidyltransferase/glutamate rich protein GrpB/ribosomal protein alanine acetyltransferase.
  
     0.665
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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