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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilFTwitching motility protein PilF. (250 aa)    
Predicted Functional Partners:
RodZ
DNA-binding protein.
  
    0.823
hisS
histidyl-tRNA synthetase.
       0.800
Lche_1506
Transmembrane protein.
 
     0.796
pilN
Tfp pilus assembly protein PilN.
  
  
 0.779
pilO
Tfp pilus assembly protein PilO.
  
   
 0.763
pilP
Tfp pilus assembly protein PilP.
  
   
 0.759
pilQ
Type IV pilus (Tfp) assembly protein PilQ.
  
   
 0.733
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.692
Lche_1792
Hypothetical protein.
  
     0.653
pilE_2
Type-IV pilin.
  
   
 0.630
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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