Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lche_1509 | Pdp | Lche_1509 | Lche_1511 | Restriction endonuclease. | Thymidine phosphorylase. | 0.848 |
Lche_1509 | Prs_2 | Lche_1509 | Lche_1510 | Restriction endonuclease. | Phosphoribosylpyrophosphate synthetase; Belongs to the ribose-phosphate pyrophosphokinase family. | 0.860 |
PdhB_1 | Prs_2 | Lche_0367 | Lche_1510 | Pyruvate/2-oxoglutarate dehydrogenase subunit E1. | Phosphoribosylpyrophosphate synthetase; Belongs to the ribose-phosphate pyrophosphokinase family. | 0.959 |
PdhB_1 | RpiB | Lche_0367 | Lche_1532 | Pyruvate/2-oxoglutarate dehydrogenase subunit E1. | Ribose/galactose isomerase. | 0.505 |
PdhB_1 | prs | Lche_0367 | Lche_0457 | Pyruvate/2-oxoglutarate dehydrogenase subunit E1. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.959 |
PdhB_1 | tkt | Lche_0367 | Lche_3079 | Pyruvate/2-oxoglutarate dehydrogenase subunit E1. | Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. | 0.531 |
Pdp | Lche_1509 | Lche_1511 | Lche_1509 | Thymidine phosphorylase. | Restriction endonuclease. | 0.848 |
Pdp | Prs_2 | Lche_1511 | Lche_1510 | Thymidine phosphorylase. | Phosphoribosylpyrophosphate synthetase; Belongs to the ribose-phosphate pyrophosphokinase family. | 0.951 |
Pdp | deoB | Lche_1511 | Lche_2472 | Thymidine phosphorylase. | Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. | 0.917 |
Prs_2 | Lche_1509 | Lche_1510 | Lche_1509 | Phosphoribosylpyrophosphate synthetase; Belongs to the ribose-phosphate pyrophosphokinase family. | Restriction endonuclease. | 0.860 |
Prs_2 | PdhB_1 | Lche_1510 | Lche_0367 | Phosphoribosylpyrophosphate synthetase; Belongs to the ribose-phosphate pyrophosphokinase family. | Pyruvate/2-oxoglutarate dehydrogenase subunit E1. | 0.959 |
Prs_2 | Pdp | Lche_1510 | Lche_1511 | Phosphoribosylpyrophosphate synthetase; Belongs to the ribose-phosphate pyrophosphokinase family. | Thymidine phosphorylase. | 0.951 |
Prs_2 | RpiB | Lche_1510 | Lche_1532 | Phosphoribosylpyrophosphate synthetase; Belongs to the ribose-phosphate pyrophosphokinase family. | Ribose/galactose isomerase. | 0.916 |
Prs_2 | algC | Lche_1510 | Lche_0500 | Phosphoribosylpyrophosphate synthetase; Belongs to the ribose-phosphate pyrophosphokinase family. | Phosphomannomutase. | 0.919 |
Prs_2 | deoB | Lche_1510 | Lche_2472 | Phosphoribosylpyrophosphate synthetase; Belongs to the ribose-phosphate pyrophosphokinase family. | Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. | 0.907 |
Prs_2 | hisG | Lche_1510 | Lche_1876 | Phosphoribosylpyrophosphate synthetase; Belongs to the ribose-phosphate pyrophosphokinase family. | ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Long subfamily. | 0.836 |
Prs_2 | prs | Lche_1510 | Lche_0457 | Phosphoribosylpyrophosphate synthetase; Belongs to the ribose-phosphate pyrophosphokinase family. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.922 |
Prs_2 | purF | Lche_1510 | Lche_3064 | Phosphoribosylpyrophosphate synthetase; Belongs to the ribose-phosphate pyrophosphokinase family. | Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine. | 0.920 |
Prs_2 | tkt | Lche_1510 | Lche_3079 | Phosphoribosylpyrophosphate synthetase; Belongs to the ribose-phosphate pyrophosphokinase family. | Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. | 0.933 |
RpiB | PdhB_1 | Lche_1532 | Lche_0367 | Ribose/galactose isomerase. | Pyruvate/2-oxoglutarate dehydrogenase subunit E1. | 0.505 |
page 1 of 3