STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
carB_2Carbamoyl-phosphate synthase large chain. (380 aa)    
Predicted Functional Partners:
Lche_2502
2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase.
 
     0.593
Lche_0544
Calcium-transporting ATPase.
  
     0.554
SseJ_1
Lipolytic enzyme, GDSL family.
  
     0.538
AhlD
Zn-dependent hydrolase GumP.
 
   
 0.528
Lche_2667
Hypothetical protein.
  
     0.498
Lche_2120
Major facilitator family transporter.
  
     0.491
Lche_1531
Hypothetical protein.
  
    0.480
Lche_3317
Coenzyme F390 synthetase FtsA.
 
     0.464
Lche_3036
Endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.450
Lche_2985
Hypothetical protein.
  
     0.441
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.