Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lche_0943 | Lche_1548 | Lche_0943 | Lche_1548 | GtrA-like protein. | Transmembrane protein. | 0.717 |
Lche_0958 | Lche_1466 | Lche_0958 | Lche_1466 | IcmL-like protein. | Hypothetical protein. | 0.709 |
Lche_0958 | Lche_1548 | Lche_0958 | Lche_1548 | IcmL-like protein. | Transmembrane protein. | 0.671 |
Lche_0958 | Lche_1836 | Lche_0958 | Lche_1836 | IcmL-like protein. | Hypothetical protein. | 0.735 |
Lche_0958 | SecA_2 | Lche_0958 | Lche_1911 | IcmL-like protein. | Coiled-coil protein. | 0.801 |
Lche_0958 | ankK | Lche_0958 | Lche_0250 | IcmL-like protein. | Substrate of the Dot/Icm secretion system. | 0.761 |
Lche_1448 | Lche_1548 | Lche_1448 | Lche_1548 | Naringenin-chalcone synthase. | Transmembrane protein. | 0.663 |
Lche_1448 | atpE | Lche_1448 | Lche_2940 | Naringenin-chalcone synthase. | ATP synthase F0F1 subunit C; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.608 |
Lche_1448 | atpE-2 | Lche_1448 | Lche_2176 | Naringenin-chalcone synthase. | ATP synthase C subunit (H transporting ATP synthase); F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.608 |
Lche_1466 | Lche_0958 | Lche_1466 | Lche_0958 | Hypothetical protein. | IcmL-like protein. | 0.709 |
Lche_1466 | Lche_1548 | Lche_1466 | Lche_1548 | Hypothetical protein. | Transmembrane protein. | 0.765 |
Lche_1466 | Lche_1836 | Lche_1466 | Lche_1836 | Hypothetical protein. | Hypothetical protein. | 0.762 |
Lche_1466 | SecA_2 | Lche_1466 | Lche_1911 | Hypothetical protein. | Coiled-coil protein. | 0.762 |
Lche_1466 | ankK | Lche_1466 | Lche_0250 | Hypothetical protein. | Substrate of the Dot/Icm secretion system. | 0.787 |
Lche_1548 | Lche_0943 | Lche_1548 | Lche_0943 | Transmembrane protein. | GtrA-like protein. | 0.717 |
Lche_1548 | Lche_0958 | Lche_1548 | Lche_0958 | Transmembrane protein. | IcmL-like protein. | 0.671 |
Lche_1548 | Lche_1448 | Lche_1548 | Lche_1448 | Transmembrane protein. | Naringenin-chalcone synthase. | 0.663 |
Lche_1548 | Lche_1466 | Lche_1548 | Lche_1466 | Transmembrane protein. | Hypothetical protein. | 0.765 |
Lche_1548 | Lche_1601 | Lche_1548 | Lche_1601 | Transmembrane protein. | Naringenin-chalcone synthase. | 0.663 |
Lche_1548 | Lche_1836 | Lche_1548 | Lche_1836 | Transmembrane protein. | Hypothetical protein. | 0.708 |
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