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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lche_1580Methyl-transferase. (260 aa)    
Predicted Functional Partners:
Lche_1376
Transmembrane protein.
  
     0.716
rlpB
Rare lipoprotein B; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane.
  
     0.660
dnaX
DNA polymerase III subunit gamma/tau.
 
    0.653
Lche_1692
Hypothetical protein.
  
     0.649
Lche_2819
Hypothetical protein.
  
     0.634
Lche_2260
Putative virulence protein.
  
     0.624
YdgA
Putative membrane protein YdgA-like protein.
  
     0.601
Lche_2153
Protein LvrA.
  
     0.555
Lche_2838
Putative helicase/relaxase.
  
     0.548
gshA
Glutamate--cysteine ligase.
  
     0.540
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.