STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybbO_1Oxidoreductase with NAD(P)-binding Rossmann-fold domain protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (286 aa)    
Predicted Functional Partners:
YcdF
Short-chain dehydrogenases/reductases family protein.
  
 
   0.695
Lche_1584
Hypothetical protein.
       0.677
phaB_5
Acetyoacetyl CoA reductase.
  
 
   0.674
fabG_4
3-oxoacyl-ACP reductase.
  
 
   0.663
phaB_2
Pteridine reductase.
  
 
   0.649
FabG_9
Acetyoacetyl CoA reductase.
  
 
   0.611
fabG_5
3-oxoacyl-ACP reductase.
  
 
   0.604
CsgA_2
Oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.576
RDH
Putative oxidoreductase.
 
     0.569
pksJ_1
Polyketide synthase, type I.
 
 
 0.539
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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