STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lche_1603FAD dependent oxidoreductase. (401 aa)    
Predicted Functional Partners:
Lche_1602
Methyltransferase.
 
  
 0.931
Lche_1601
Naringenin-chalcone synthase.
 
  
 0.823
etfB
Electron transfer flavoprotein beta-subunit (Beta-ETF).
  
 
 0.771
etfD
Electron transfer flavoprotein-ubiquinon; Accepts electrons from ETF and reduces ubiquinone.
  
 
 0.740
Lche_1604
Hypothetical protein.
       0.518
etfA
Electron transfer flavoprotein, alpha subunit.
  
 
 0.471
pksJ_1
Polyketide synthase, type I.
  
 
 0.456
Lche_1834
acyl-CoA synthetase.
  
 
 0.456
Lche_2715
acyl-CoA synthetase.
  
 
 0.456
Lche_0252
L-gulono-gamma-lactone oxidase.
 
   
 0.433
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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