STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yceIPolyprenyl-pyrophosphate binding protein; Belongs to the UPF0312 family. (196 aa)    
Predicted Functional Partners:
yceJ
Cytochrome b561.
 
  
 0.962
YceI_1
Putative YceI-like family protein; Belongs to the UPF0312 family.
 
     0.961
Lche_1675
Signal peptide protein.
       0.772
YceJ_2
Cytochrome b561 family protein.
 
  
 0.707
bioD
Dethiobiotin synthetase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.
       0.515
bioH
Biotin biosynthesis protein BioH.
       0.500
Lche_0899
Hypothetical protein; Belongs to the UPF0276 family.
       0.496
Lche_0900
Hypothetical protein.
       0.496
bioF
8-amino-7-oxononanoate synthase.
       0.403
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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