Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lche_1287 | Udk_1 | Lche_1287 | Lche_2904 | Uridine kinase. | Uridine kinase. | 0.946 |
Lche_1287 | pyrF | Lche_1287 | Lche_1730 | Uridine kinase. | Orotidine 5`-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.912 |
Lche_1287 | pyrH | Lche_1287 | Lche_1667 | Uridine kinase. | Uridylate kinase. | 0.916 |
Lche_1287 | surE | Lche_1287 | Lche_1295 | Uridine kinase. | Acid phosphatase SurE (Stationary phase survival protein); Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.903 |
Lche_1287 | udk | Lche_1287 | Lche_2725 | Uridine kinase. | Uridine kinase. | 0.922 |
Lche_1287 | udk-2 | Lche_1287 | Lche_1198 | Uridine kinase. | Uridine kinase. | 0.951 |
Lche_1287 | upp | Lche_1287 | Lche_2518 | Uridine kinase. | Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | 0.941 |
Udk_1 | Lche_1287 | Lche_2904 | Lche_1287 | Uridine kinase. | Uridine kinase. | 0.946 |
Udk_1 | pyrF | Lche_2904 | Lche_1730 | Uridine kinase. | Orotidine 5`-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.912 |
Udk_1 | pyrH | Lche_2904 | Lche_1667 | Uridine kinase. | Uridylate kinase. | 0.916 |
Udk_1 | surE | Lche_2904 | Lche_1295 | Uridine kinase. | Acid phosphatase SurE (Stationary phase survival protein); Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.903 |
Udk_1 | udk | Lche_2904 | Lche_2725 | Uridine kinase. | Uridine kinase. | 0.900 |
Udk_1 | udk-2 | Lche_2904 | Lche_1198 | Uridine kinase. | Uridine kinase. | 0.927 |
Udk_1 | upp | Lche_2904 | Lche_2518 | Uridine kinase. | Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | 0.941 |
carA | pyrB | Lche_2399 | Lche_0675 | Carbamoyl-phosphate synthetase, glutamine (small subunit); Belongs to the CarA family. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.999 |
carA | pyrD | Lche_2399 | Lche_1229 | Carbamoyl-phosphate synthetase, glutamine (small subunit); Belongs to the CarA family. | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.968 |
carA | pyrF | Lche_2399 | Lche_1730 | Carbamoyl-phosphate synthetase, glutamine (small subunit); Belongs to the CarA family. | Orotidine 5`-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.947 |
carA | upp | Lche_2399 | Lche_2518 | Carbamoyl-phosphate synthetase, glutamine (small subunit); Belongs to the CarA family. | Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | 0.571 |
pyrB | carA | Lche_0675 | Lche_2399 | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | Carbamoyl-phosphate synthetase, glutamine (small subunit); Belongs to the CarA family. | 0.999 |
pyrB | pyrD | Lche_0675 | Lche_1229 | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.966 |
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