STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pilZ_1Type 4 fimbrial biogenesis protein PilZ. (113 aa)    
Predicted Functional Partners:
Gmr_3
Regulatory protein (GGDEF domain).
    
 
 0.894
Cph2_4
Regulatory protein (GGDEF and EAL domains).
    
   0.876
Cph2_5
Regulatory protein (GGDEF and EAL domains).
    
   0.876
pilN
Tfp pilus assembly protein PilN.
  
   
 0.826
pilP
Tfp pilus assembly protein PilP.
  
   
 0.826
pilQ
Type IV pilus (Tfp) assembly protein PilQ.
  
   
 0.825
pilB
Pilus assembly protein PilB.
  
 
 
 0.822
DnaX
DNA polymerase III, delta' subunit.
     
 0.816
pilO
Tfp pilus assembly protein PilO.
  
   
 0.815
Lche_0372
LysM domain-containing protein.
  
    0.785
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.