Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lche_0521 | Lche_1834 | Lche_0521 | Lche_1834 | Saframycin Mx1 synthetase B. | acyl-CoA synthetase. | 0.998 |
Lche_0521 | Lche_2506 | Lche_0521 | Lche_2506 | Saframycin Mx1 synthetase B. | acyl-CoA synthetase. | 0.999 |
Lche_0521 | Lche_2715 | Lche_0521 | Lche_2715 | Saframycin Mx1 synthetase B. | acyl-CoA synthetase. | 0.998 |
Lche_0521 | pksJ_1 | Lche_0521 | Lche_0504 | Saframycin Mx1 synthetase B. | Polyketide synthase, type I. | 0.998 |
Lche_0521 | rnhB | Lche_0521 | Lche_1784 | Saframycin Mx1 synthetase B. | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.805 |
Lche_1834 | Lche_0521 | Lche_1834 | Lche_0521 | acyl-CoA synthetase. | Saframycin Mx1 synthetase B. | 0.998 |
Lche_1834 | Lche_2506 | Lche_1834 | Lche_2506 | acyl-CoA synthetase. | acyl-CoA synthetase. | 0.999 |
Lche_1834 | Lche_2715 | Lche_1834 | Lche_2715 | acyl-CoA synthetase. | acyl-CoA synthetase. | 0.997 |
Lche_1834 | dnaN | Lche_1834 | Lche_2908 | acyl-CoA synthetase. | DNA polymerase III, beta chain; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of r [...] | 0.505 |
Lche_1834 | pksJ_1 | Lche_1834 | Lche_0504 | acyl-CoA synthetase. | Polyketide synthase, type I. | 0.997 |
Lche_1834 | rnhA | Lche_1834 | Lche_1776 | acyl-CoA synthetase. | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.460 |
Lche_1834 | rnhB | Lche_1834 | Lche_1784 | acyl-CoA synthetase. | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.868 |
Lche_2506 | Lche_0521 | Lche_2506 | Lche_0521 | acyl-CoA synthetase. | Saframycin Mx1 synthetase B. | 0.999 |
Lche_2506 | Lche_1834 | Lche_2506 | Lche_1834 | acyl-CoA synthetase. | acyl-CoA synthetase. | 0.999 |
Lche_2506 | Lche_2715 | Lche_2506 | Lche_2715 | acyl-CoA synthetase. | acyl-CoA synthetase. | 0.999 |
Lche_2506 | pksJ_1 | Lche_2506 | Lche_0504 | acyl-CoA synthetase. | Polyketide synthase, type I. | 0.999 |
Lche_2506 | rnhB | Lche_2506 | Lche_1784 | acyl-CoA synthetase. | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.872 |
Lche_2715 | Lche_0521 | Lche_2715 | Lche_0521 | acyl-CoA synthetase. | Saframycin Mx1 synthetase B. | 0.998 |
Lche_2715 | Lche_1834 | Lche_2715 | Lche_1834 | acyl-CoA synthetase. | acyl-CoA synthetase. | 0.997 |
Lche_2715 | Lche_2506 | Lche_2715 | Lche_2506 | acyl-CoA synthetase. | acyl-CoA synthetase. | 0.999 |
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