Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lche_1834 | Lche_2715 | Lche_1834 | Lche_2715 | acyl-CoA synthetase. | acyl-CoA synthetase. | 0.997 |
Lche_1834 | pksJ_1 | Lche_1834 | Lche_0504 | acyl-CoA synthetase. | Polyketide synthase, type I. | 0.997 |
Lche_1834 | pnp | Lche_1834 | Lche_3241 | acyl-CoA synthetase. | Polynucleotide phosphorylase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.408 |
Lche_1834 | ppiB | Lche_1834 | Lche_0018 | acyl-CoA synthetase. | Peptidyl-prolyl cis-trans isomerase B (cyclophilin-type PPIase family); PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.965 |
Lche_1834 | rhlE | Lche_1834 | Lche_1815 | acyl-CoA synthetase. | ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family. | 0.826 |
Lche_1834 | rplC | Lche_1834 | Lche_3373 | acyl-CoA synthetase. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.962 |
Lche_1834 | rplD | Lche_1834 | Lche_3372 | acyl-CoA synthetase. | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.911 |
Lche_1834 | rplM | Lche_1834 | Lche_0398 | acyl-CoA synthetase. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.976 |
Lche_1834 | rplX | Lche_1834 | Lche_3362 | acyl-CoA synthetase. | 50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.954 |
Lche_1834 | yjeF | Lche_1834 | Lche_0405 | acyl-CoA synthetase. | Carbohydrate kinase; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epim [...] | 0.464 |
Lche_2715 | Lche_1834 | Lche_2715 | Lche_1834 | acyl-CoA synthetase. | acyl-CoA synthetase. | 0.997 |
Lche_2715 | pksJ_1 | Lche_2715 | Lche_0504 | acyl-CoA synthetase. | Polyketide synthase, type I. | 0.997 |
Lche_2715 | pnp | Lche_2715 | Lche_3241 | acyl-CoA synthetase. | Polynucleotide phosphorylase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.408 |
Lche_2715 | ppiB | Lche_2715 | Lche_0018 | acyl-CoA synthetase. | Peptidyl-prolyl cis-trans isomerase B (cyclophilin-type PPIase family); PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.965 |
Lche_2715 | rhlE | Lche_2715 | Lche_1815 | acyl-CoA synthetase. | ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family. | 0.826 |
Lche_2715 | rplC | Lche_2715 | Lche_3373 | acyl-CoA synthetase. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.962 |
Lche_2715 | rplD | Lche_2715 | Lche_3372 | acyl-CoA synthetase. | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.911 |
Lche_2715 | rplM | Lche_2715 | Lche_0398 | acyl-CoA synthetase. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.976 |
Lche_2715 | rplX | Lche_2715 | Lche_3362 | acyl-CoA synthetase. | 50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.954 |
Lche_2715 | yjeF | Lche_2715 | Lche_0405 | acyl-CoA synthetase. | Carbohydrate kinase; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epim [...] | 0.464 |
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