Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CyaB_2 | folE_1 | Lche_1162 | Lche_1820 | Guanylate cyclase. | GTP cyclohydrolase I. | 0.800 |
CyaB_2 | folE_2 | Lche_1162 | Lche_3242 | Guanylate cyclase. | GTP cyclohydrolase I. | 0.800 |
CyaB_2 | ndk | Lche_1162 | Lche_1501 | Guanylate cyclase. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.923 |
CyaB_2 | pykA | Lche_1162 | Lche_3076 | Guanylate cyclase. | Pyruvate kinase II; Belongs to the pyruvate kinase family. | 0.914 |
CyaB_2 | ribA | Lche_1162 | Lche_1190 | Guanylate cyclase. | Riboflavin biosynthesis protein RibA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.828 |
CyaB_2 | spoT | Lche_1162 | Lche_1065 | Guanylate cyclase. | Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 0.906 |
FolB | folE_1 | Lche_2410 | Lche_1820 | Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin. | GTP cyclohydrolase I. | 0.819 |
FolB | folE_2 | Lche_2410 | Lche_3242 | Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin. | GTP cyclohydrolase I. | 0.819 |
FolB | folK | Lche_2410 | Lche_1514 | Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin. | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase. | 0.996 |
FolB | folP | Lche_2410 | Lche_3217 | Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin. | Dihydropteroate synthase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives. | 0.996 |
FolB | ribA | Lche_2410 | Lche_1190 | Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin. | Riboflavin biosynthesis protein RibA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.430 |
Lche_2792 | folE_1 | Lche_2792 | Lche_1820 | 6-pyruvoyl tetrahydropterin synthase. | GTP cyclohydrolase I. | 0.962 |
Lche_2792 | folE_2 | Lche_2792 | Lche_3242 | 6-pyruvoyl tetrahydropterin synthase. | GTP cyclohydrolase I. | 0.962 |
folE_1 | CyaB_2 | Lche_1820 | Lche_1162 | GTP cyclohydrolase I. | Guanylate cyclase. | 0.800 |
folE_1 | FolB | Lche_1820 | Lche_2410 | GTP cyclohydrolase I. | Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin. | 0.819 |
folE_1 | Lche_2792 | Lche_1820 | Lche_2792 | GTP cyclohydrolase I. | 6-pyruvoyl tetrahydropterin synthase. | 0.962 |
folE_1 | folE_2 | Lche_1820 | Lche_3242 | GTP cyclohydrolase I. | GTP cyclohydrolase I. | 0.906 |
folE_1 | folK | Lche_1820 | Lche_1514 | GTP cyclohydrolase I. | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase. | 0.976 |
folE_1 | folP | Lche_1820 | Lche_3217 | GTP cyclohydrolase I. | Dihydropteroate synthase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives. | 0.903 |
folE_1 | ndk | Lche_1820 | Lche_1501 | GTP cyclohydrolase I. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.825 |
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