Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yvfE_1Cell wall biosynthesis regulatory pyridoxal phosphate-dependent protein; Belongs to the DegT/DnrJ/EryC1 family. (814 aa)    
Predicted Functional Partners:
epsL
Putative sugar transferase EpsL.
 
  
 0.831
arnE_2
4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE.
  
  
 0.812
arnE_1
4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE.
  
  
 0.811
Lche_1830
Arginase family protein.
 
     0.802
CapD
Polysaccharide biosynthesis protein.
 
  
 0.796
BtrR
Aminotransferase WecE; Belongs to the DegT/DnrJ/EryC1 family.
  
     0.772
ArnB
Polysaccharide biosynthesis protein; Belongs to the DegT/DnrJ/EryC1 family.
  
     0.768
ArgD_2
Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.592
TuaD
UDP-glucose/GDP-mannose dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
  
 0.558
YfdH
Bactoprenol glucosyl transferase.
 
  
 0.531
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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