STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DWF7-dehydrocholesterol reductase. (431 aa)    
Predicted Functional Partners:
Lche_2890
Serine carboxypeptidase.
  
     0.745
Lche_1870
Leucine Rich repeats (2 copies).
  
     0.731
legL1
Gala protein type 1, 3 or 4.
  
     0.694
Lche_2252
Carrier protein.
  
     0.654
Lche_0522
Protein phosphatase 2C.
  
     0.640
Lche_3027
Ras family GTPase.
  
 
  0.620
HopD2
Tyrosine phosphatase II superfamily protein.
  
     0.586
Lche_1856
Polysaccharide deacetylase.
       0.577
Lche_0869
Phosphoserine phosphatase.
 
     0.575
Lche_1855
GNAT family acetyltransferase.
  
    0.539
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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