STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LplT2-acylglycerophosphoethanolamine acyltransferase. (429 aa)    
Predicted Functional Partners:
aas
2- acylglycerophosphoethanolamineacyltransferase/acyl-(acyl- carrier-protein) synthetase.
 
 0.946
pksJ_1
Polyketide synthase, type I.
  
 0.916
Lche_1834
acyl-CoA synthetase.
  
 0.916
Lche_2715
acyl-CoA synthetase.
  
 0.916
PksJ_2
Hypothetical protein.
  
 0.854
PksJ_4
Polyketide synthase.
  
 0.846
Lche_1870
Leucine Rich repeats (2 copies).
       0.609
Lche_2506
acyl-CoA synthetase.
  
 
 0.548
PksJ_1
Hypothetical protein.
  
 0.423
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.411
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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