STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AlkB2Alkane monooxygenase. (350 aa)    
Predicted Functional Partners:
AdhT
Alcohol dehydrogenase.
     
 0.905
frmA
Alcohol dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
    
 0.903
AldA
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
 0.900
ywdH
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
 0.900
fadH
2,4-dienoyl-CoA reductase.
 
   
 0.773
Lche_1575
Sterol desaturase-related protein.
 
  
 0.743
Lche_2186
Oxidoreductase, FAD-binding protein.
 
  
 0.637
Lche_1972
Hypothetical protein.
       0.537
rubR
Rubredoxin.
 
  
 0.513
Lche_2506
acyl-CoA synthetase.
     
 0.493
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.