Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lche_1977Polysaccharide deacetylase. (286 aa)    
Predicted Functional Partners:
Lche_0631
Protein IcmE (DotG).
  
     0.674
Lche_0957
Enhanced entry protein EnhA.
  
     0.642
enhA_1
Enhanced entry protein EnhA.
  
     0.585
ankH
Ankyrin repeat-containing protein H.
  
     0.582
Lche_1005
Hypothetical protein.
  
     0.579
dotA
Defect in organelle trafficking protein DotA.
  
     0.567
Lche_0635
IcmJ protein.
  
     0.566
Lche_2153
Protein LvrA.
  
     0.531
dotC
Defect in organelle trafficking lipoprotein DotC.
  
   
 0.527
Lche_0665
Hypothetical protein.
  
     0.520
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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