Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Lche_1983Hypothetical protein. (106 aa)    
Predicted Functional Partners:
Lche_1982
Hypothetical protein.
  
  
 0.846
Lche_1981
Hypothetical protein.
       0.838
aaeB
P-hydroxybenzoic acid efflux pump subunit AaeB.
       0.707
lspJ
Type II secretory pathway protein LspJ.
  
 
 0.671
Lche_1986
Pterin-4-alpha-carbinolamine dehydratase.
       0.643
lspE
Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 
 0.620
pilB
Pilus assembly protein PilB.
  
 
 0.620
lspK
Type II secretory pathway protein LspK.
  
 
 0.618
mltA_1
Membrane-bound lytic murein transglycosylase; Murein-degrading enzyme. May play a role in recycling of muropeptides during cell elongation and/or cell division.
       0.616
pilC
Pilus assembly protein PilC.
  
  
 0.606
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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