Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lche_1996Hypothetical protein. (419 aa)    
Predicted Functional Partners:
Lche_1117
Choline kinase.
  
     0.693
Lche_0077
Putative secreted esterase.
  
     0.669
Pdc
Pyruvate decarboxylase.
  
     0.640
Lche_0108
D12 class N6 adenine-specific DNA methyltransferase.
  
     0.638
Lche_0168
Putative conjugative transfer protein TraI.
  
     0.629
Lche_0071
Multifunctional nucleotidyltransferase/glutamate rich protein GrpB/ribosomal protein alanine acetyltransferase.
  
     0.617
Lche_0127
Aminoglycoside 6'-N-acetyltransferase.
  
     0.609
Lche_2250
NHL repeat protein.
  
     0.582
Lche_2222
Hypothetical protein.
  
     0.572
Lche_0123
Hypothetical protein.
  
     0.571
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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