Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Lche_0085 | pdxJ | Lche_0085 | Lche_2005 | Pyridoxamine 5'-phosphate oxidase. | Pyridoxal phosphate biosynthetic protein pdxJ; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate. | 0.622 |
| Lche_0085 | ribA | Lche_0085 | Lche_1190 | Pyridoxamine 5'-phosphate oxidase. | Riboflavin biosynthesis protein RibA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.417 |
| Lche_2003 | Lche_2004 | Lche_2003 | Lche_2004 | 2-oxoglutarate ferredoxin oxidoreductase subunit beta. | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | 0.999 |
| Lche_2003 | era | Lche_2003 | Lche_2007 | 2-oxoglutarate ferredoxin oxidoreductase subunit beta. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.552 |
| Lche_2003 | pdxJ | Lche_2003 | Lche_2005 | 2-oxoglutarate ferredoxin oxidoreductase subunit beta. | Pyridoxal phosphate biosynthetic protein pdxJ; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate. | 0.800 |
| Lche_2003 | recO | Lche_2003 | Lche_2006 | 2-oxoglutarate ferredoxin oxidoreductase subunit beta. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.552 |
| Lche_2004 | Lche_2003 | Lche_2004 | Lche_2003 | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | 2-oxoglutarate ferredoxin oxidoreductase subunit beta. | 0.999 |
| Lche_2004 | era | Lche_2004 | Lche_2007 | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.575 |
| Lche_2004 | pdxJ | Lche_2004 | Lche_2005 | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | Pyridoxal phosphate biosynthetic protein pdxJ; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate. | 0.812 |
| Lche_2004 | recO | Lche_2004 | Lche_2006 | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.585 |
| PdxH_2 | pdxH | Lche_1082 | Lche_0451 | Pyridoxamine 5'-phosphate oxidase. | Pyridoxine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | 0.923 |
| PdxH_2 | pdxJ | Lche_1082 | Lche_2005 | Pyridoxamine 5'-phosphate oxidase. | Pyridoxal phosphate biosynthetic protein pdxJ; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate. | 0.926 |
| PdxH_2 | ribA | Lche_1082 | Lche_1190 | Pyridoxamine 5'-phosphate oxidase. | Riboflavin biosynthesis protein RibA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.417 |
| era | Lche_2003 | Lche_2007 | Lche_2003 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 2-oxoglutarate ferredoxin oxidoreductase subunit beta. | 0.552 |
| era | Lche_2004 | Lche_2007 | Lche_2004 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | 0.575 |
| era | pdxJ | Lche_2007 | Lche_2005 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Pyridoxal phosphate biosynthetic protein pdxJ; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate. | 0.693 |
| era | recO | Lche_2007 | Lche_2006 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.926 |
| pdxA | pdxJ | Lche_2535 | Lche_2005 | 4-hydroxythreonine-4-phosphate dehydrogenase; Catalyzes the NAD(P)-dependent oxidation of 4-(phosphooxy)-L- threonine (HTP) into 2-amino-3-oxo-4-(phosphooxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP). | Pyridoxal phosphate biosynthetic protein pdxJ; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate. | 0.859 |
| pdxA | ribA | Lche_2535 | Lche_1190 | 4-hydroxythreonine-4-phosphate dehydrogenase; Catalyzes the NAD(P)-dependent oxidation of 4-(phosphooxy)-L- threonine (HTP) into 2-amino-3-oxo-4-(phosphooxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP). | Riboflavin biosynthesis protein RibA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.505 |
| pdxH | PdxH_2 | Lche_0451 | Lche_1082 | Pyridoxine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | Pyridoxamine 5'-phosphate oxidase. | 0.923 |
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