STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lche_2059Lipopolysaccharide biosynthesis glycosyltransferase. (262 aa)    
Predicted Functional Partners:
RfaF
Heptosyl transferase, glycosyltransferase family 9 protein.
  
 0.944
Lche_2058
O-antigen biosynthesis protein.
 
  
 0.860
ClpA
ATP binding protease component ClpA; Belongs to the ClpA/ClpB family.
  
    0.801
clpS
Regulatory protein for ClpA substrate specificity; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.
       0.717
lpxK_1
Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
   
 0.662
epsL
Putative sugar transferase EpsL.
  
  
 0.599
pksJ_1
Polyketide synthase, type I.
  
 
 0.577
Lche_1834
acyl-CoA synthetase.
  
 
 0.577
Lche_2715
acyl-CoA synthetase.
  
 
 0.577
RfaQ
Glycosyltransferase.
 
  
 0.553
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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