Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Lche_2126D-xylose reductase III. (280 aa)    
Predicted Functional Partners:
Lche_2127
GNAT family acetyltransferase.
       0.757
Lche_2128
NYN domain protein.
       0.693
IolS
Aldo/keto reductase.
 
 
 0.665
Lche_3205
Serine protein kinase.
   
    0.664
Lche_2129
Nucleoside triphosphate pyrophosphohydrolase MazG.
       0.655
Lche_2124
ABC transporter ATP binding transmembrane protein.
       0.526
Lche_2125
ATP-binding transmembrane ABC transporter.
       0.526
pksJ_1
Polyketide synthase, type I.
  
 
 0.492
Lche_1834
acyl-CoA synthetase.
  
 
 0.492
Lche_2715
acyl-CoA synthetase.
  
 
 0.492
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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