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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lche_2133Protein TraD. (623 aa)    
Predicted Functional Partners:
Lche_2132
TraI.
 
   
 0.922
Lche_0158
Putative conjugative transfer protein TraW.
 
    0.783
Lche_0162
Putative conjugative transfer protein TraF.
 
     0.781
Lche_0781
Conjugative transfer protein TraB.
 
     0.781
traH_2
Protein TraH.
 
     0.780
Lche_2144
Protein TraC.
 
  
 0.780
traC
F pilus assembly protein TraC.
 
  
 0.779
Lche_0788
Conjugal pilus assembly protein TraF.
 
     0.779
traG
Mating contact stabilization protein TraG.
 
     0.779
Lche_2135
Protein TraG.
 
     0.779
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.