Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lche_2135Protein TraG. (906 aa)    
Predicted Functional Partners:
traH_2
Protein TraH.
 
     0.948
Lche_2138
Pilus assembly protein TraF.
 
     0.802
Lche_2140
Putative conjugative transfer protein TrbC.
 
     0.802
Lche_0162
Putative conjugative transfer protein TraF.
 
     0.789
Lche_0158
Putative conjugative transfer protein TraW.
 
     0.788
Lche_0161
Conjugal transfer mating pair stabilization protein TraN.
 
     0.788
Lche_0788
Conjugal pilus assembly protein TraF.
 
     0.788
Lche_2144
Protein TraC.
 
   
 0.786
Lche_2148
Putative conjugative transfer protein TraE.
 
     0.785
Lche_0159
Putative conjugative transfer protein TraU.
 
     0.784
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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