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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lche_2135Protein TraG. (906 aa)    
Predicted Functional Partners:
traH_2
Protein TraH.
 
   
 0.948
Lche_2140
Putative conjugative transfer protein TrbC.
 
   
 0.786
Lche_2138
Pilus assembly protein TraF.
 
     0.785
Lche_0158
Putative conjugative transfer protein TraW.
 
   
 0.783
Lche_0161
Conjugal transfer mating pair stabilization protein TraN.
 
   
 0.782
Lche_0162
Putative conjugative transfer protein TraF.
 
     0.782
traW
Type-F conjugative transfer system protein.
 
   
 0.782
Lche_0787
Conjugative transfer protein TraN.
 
   
 0.782
Lche_0788
Conjugal pilus assembly protein TraF.
 
     0.782
Lche_2142
Protein TraW.
 
   
 0.782
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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