STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lche_2140Putative conjugative transfer protein TrbC. (218 aa)    
Predicted Functional Partners:
Lche_2138
Pilus assembly protein TraF.
 
     0.952
Lche_2137
Thioredoxin.
 
     0.947
Lche_2139
Protein TraN.
 
     0.947
Lche_2142
Protein TraW.
 
   
 0.945
Lche_2141
Protein TraU.
 
     0.943
Lche_2144
Protein TraC.
 
     0.942
Lche_2146
Putative conjugative transfer protein TraB.
 
   
 0.935
Lche_2148
Putative conjugative transfer protein TraE.
 
     0.935
traW
Type-F conjugative transfer system protein.
 
   
 0.791
Lche_0164
Putative conjugative transfer protein TraH.
 
   
 0.786
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.