STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lche_2145Conjugative transfer: assembly. (116 aa)    
Predicted Functional Partners:
Lche_2147
Putative conjugative transfer protein TraK.
       0.797
Lche_2148
Putative conjugative transfer protein TraE.
       0.797
Lche_2149
Putative sex pilus assembly protein-like protein.
       0.797
Lche_2150
Putative fimbrial protein precursor-like protein.
       0.797
Lche_2143
Putative F pilus extension/retraction protein trbI.
       0.794
Lche_2144
Protein TraC.
       0.778
Lche_2141
Protein TraU.
       0.776
Lche_2142
Protein TraW.
       0.771
Lche_2146
Putative conjugative transfer protein TraB.
       0.761
Lche_2140
Putative conjugative transfer protein TrbC.
       0.753
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.