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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phbC_2Polyhydroxyalkanoic synthase. (598 aa)    
Predicted Functional Partners:
pta
Bifunctional enoyl-CoA hydratase/phosphate acetyltransferase.
  
 0.923
ack
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
 
  
 0.798
fabI_2
enoyl-ACP reductase.
  
    0.784
PhaR
PHB/PHA accumulation regulator DNA-binding domain protein.
 
   
 0.770
Lche_2163
Putative S-isoprenylcysteine methyltransferase.
 
     0.745
Lche_2164
Hypothetical protein.
       0.713
Pta
Phosphate acetyl/butaryl transferase.
  
 0.702
Lche_2283
Poly(3-hydroxybutyrate) depolymerase.
 
   
 0.656
Lche_2407
Esterase.
 
   
 0.650
Lche_0384
Alpha-beta hydrolase family transporter esterase.
 
   
 0.490
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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