Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
copA_1Copper efflux ATPase. (983 aa)    
Predicted Functional Partners:
Lche_2189
Hypothetical protein.
 
     0.727
tatC
Sec-independent protein translocase TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.
    
 
 0.714
Lche_0841
Hypothetical protein.
  
  
 0.661
CopA_1
Cation transport ATPase.
 
 
 0.657
PacS_1
Cation transport ATPase.
 
  
 0.523
copA_2
Copper transporting P-type ATPase.
 
  
 0.521
ActP
Copper efflux ATPase.
 
  
 0.517
Lche_2187
Ferric reductase like transmembrane component.
 
     0.497
Lche_0060
Cadmium efflux ATPase.
 
  
 0.473
Lche_2188
Hypothetical protein.
    
 0.466
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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