Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Lche_2220Hypothetical protein. (256 aa)    
Predicted Functional Partners:
Cfa_2
Cyclopropane-fatty-acyl-phospholipid synthase.
  
 0.989
Lche_2219
Flavin containing amine oxidoreductase.
 
  
 0.967
Lche_2223
3-oxo-5-alpha-steroid 4-dehydrogenase.
 
     0.958
Lche_2222
Hypothetical protein.
 
     0.861
Lche_0616
Amine oxidase, flavin containing.
 
  
 0.816
cfa
Cyclopropane fatty acyl phospholipid synthase.
  
 0.741
Lche_3145
Deoxyribodipyrimidine photolyase-related protein.
 
   
 0.592
Lche_2225
Fatty acid desaturase.
 
     0.482
PhrB
Deoxyribodipyrimidine photolyase phrB; Belongs to the DNA photolyase family.
 
  
 0.475
Lche_3294
Fatty acid desaturase.
 
     0.444
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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