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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FadDAcyl CoA synthetase, long chain fatty acid:CoA ligase. (500 aa)    
Predicted Functional Partners:
Lche_2506
acyl-CoA synthetase.
 
 
0.908
Lche_1834
acyl-CoA synthetase.
0.866
Lche_2715
acyl-CoA synthetase.
0.865
MenE
Acyl CoA ligase.
 
  
 
0.859
LgrB
Non-ribosomal peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
 
 
0.855
lidS
acyl-CoA synthetase.
  
  
 
0.853
Hcl
Acyl CoA synthetase, long chain fatty acid:CoA ligase.
  
  
 
0.847
pksJ_1
Polyketide synthase, type I.
 
0.834
PksJ_2
Hypothetical protein.
 
 0.702
fadB
3-hydroxyacyl CoA dehydrogenase oxidoreductase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.666
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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