Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Lche_2283Poly(3-hydroxybutyrate) depolymerase. (440 aa)    
Predicted Functional Partners:
PhbC_5
Poly-beta-hydroxybutyrate synthase.
 
  
 0.966
phbC_1
PHA synthase.
 
  
 0.963
phbC_3
PHA synthase.
 
   
 0.661
phbC_2
Polyhydroxyalkanoic synthase.
 
   
 0.650
PhaR
PHB/PHA accumulation regulator DNA-binding domain protein.
 
   
 0.631
Lche_2284
Acid-resistance membrane protein.
       0.533
Lche_2407
Esterase.
  
     0.501
Lche_2282
Hypothetical protein.
       0.498
Lche_0384
Alpha-beta hydrolase family transporter esterase.
  
     0.448
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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