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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cadA_1Lysine decarboxylase, inducible. (713 aa)    
Predicted Functional Partners:
lysAC_1
Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC).
    
 0.876
lysAC_2
Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC); Belongs to the Orn/Lys/Arg decarboxylase class-II family.
    
 0.876
Lche_2799
ATPase MoxR.
   
 
 0.759
speB
Agmatinase; Belongs to the arginase family.
    
 0.583
Lche_2288
Hypothetical protein.
       0.513
Dns
Putative endonuclease-1.
  
     0.485
Lche_0535
Hypothetical protein.
  
 
 0.451
Lche_0041
Putative endonuclease-1.
  
     0.443
Lche_1037
Hypothetical protein.
  
     0.422
bcsC
Cellulose synthase operon protein C precursor.
  
     0.416
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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